Gene Regulation – Teif Lab

Gene Regulation – Teif Lab

  • Teif Lab Info
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    • NucTools
    • ChromHL
    • NRLcalc
  • Cover art
  • Teaching
    • Practical Course Introduction to NGS Analysis (2020)
    • BS222 Genome Science
    • BS312 Genome Bioinformatics
    • BS349 Molecular Basis of Cancer
    • Practical Course Introduction to NGS Analysis (2017)
  • NucPosDB
    • NucPosDB home
    • cfDNA datasets
    • Nuc maps in vivo
    • Stable nucleosomes
    • cfDNA analysis
    • Nuc maps analysis
    • Predict nuc positioning
  • TF binding
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Genome Science

Below is the current version of my lectures for the “Genome Science” module — 2nd Year BSc program, academic year 2019-20. Please feel free to use for educational purposes. I will be also happy to get your feedback.

  • Lecture 1. Historic intro, genomes and sequencing projects (VT)
  • Lecture 2. Sequencing technologies (VT)
  • Lecture 3. What is a gene? (VT)
  • Lecture 4. Epigenetics overview (PVW) (available on the Moodle)
  • Lecture 5. Transcription regulation (VT)
  • Lecture 6. Nucleosome positioning and 3D genome organisation (VT)
  • Lecture 7. DNA methylation and other DNA modifications (VT)
  • Lecture 9. NGS experiments and analysis I: the basics (VT)
  • Lecture 10. NGS experiments and analysis II: data integration (VT)

Practicals:

  • Practical 1. MNase-seq (wet lab) (available on the Moodle)
  • Practical 2. NGS analysis (IT lab). ChIP-seq processing in Galaxy
  • Practical 3. NGS analysis (IT lab). Integration of ChIP-seq and RNA-seq data

 

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