NGS Analysis Proficio Course, June 6, 2017, University of Essex:
- Lecture “Introduction to NGS analysis” (Vladimir Teif). Download slides
- Practical “ChIP-seq analysis” (Vladimir Teif). Download instructions
Task 1. Map p53. Download bash file
Task 2. Map Input. Download bash file
Task 3. Peak calling. Download bash file
Task 4. Intersect peaks. Download bash file
Task 5. Determine enrichment. Download bash file
- Practical “RNA-seq analysis” (Antonio Marco)
Download practical instructions
- Practical “Integrative analysis” (Vladimir Teif). Download instructions
Task 6. Convert RNA-seq results to BED-compatible format. Download bash file
Task 7. Merge ChIP-seq & RNA-seq data, find correlations. Download bash file
Task 8. Calculate aggregate occupancy profiles. Download bash file
Task 9. Motif analysis and GO analysis. See instructions